CAM atmosphere model initialization Initialize PIO subsystem: iotype = 6 ------------------------------------------ *********** CAM LOG OUTPUT *************** ------------------------------------------ Branch of an earlier run ********** CASE = n.n202.NHISTfrc2.f09_tn14.historical.002_NH ********** UNSET ********** Time Manager Configuration ********** Calendar type: NO_LEAP Timestep size (seconds): 1800 Start date (yr mon day tod): 1051 1 1 0 Stop date (yr mon day tod): 1270 1 1 0 Reference date (yr mon day tod): 1051 1 1 0 Current step number: 3486481 Current date (yr mon day tod): 1250 1 1 1800 ************************************************ SPMD SWAP_COMM OPTIONS: swap_comm_protocol = 4 swap_comm_maxreq = 128 SPMD FLOW CONTROL GATHER OPTION: fc_gather_flow_cntl = 64 PHYS_GRID options: Using PCOLS = 16 phys_loadbalance = 2 phys_twin_algorithm = 1 phys_alltoall = -1 chunks_per_thread = 1 (GETFIL): attempting to find local file n.n202.N1850frc2.f09_tn14.pi_control.002_NH.cam.r.1250-01-01-00000.nc (GETFIL): using n.n202.N1850frc2.f09_tn14.pi_control.002_NH.cam.r.1250-01-01-00000.nc in current working directory cam_initfiles_readnl options: Continuation of case: n.n202.N1850frc2.f09_tn14.pi_control.002_NH Branch run will start from file: n.n202.N1850frc2.f09_tn14.pi_control.002_NH.cam.r.1250-01-01-00000.nc Maximum abs value of scale factor used to perturb initial conditions, pertlim = 0.000000000000000E+000 Summary of constituent module options: Read constituent initial values from initial file by default: T Read in cam_history_nl namelist from: atm_in Initial conditions history files will be written yearly. chem_surfvals_readnl: Settings for control of GHG surface values scenario_ghg = CHEM_LBC_FILE GHG values time interpolated from LBC file: flbc_file = /cluster/shared/noresm/inputdata/atm/waccm/lb/LBC_1750-2015_CMIP6_GlobAnnAvg_c1 80926.nc flbc_type = SERIAL Species from LBC file: CO2 CH4 N2O CFC11eq CFC12 Dry adiabatic adjustment applied to top N layers; N= 3 Dry adiabatic adjustment number of iterations for convergence = 15 MG microphysics namelist: micro_mg_version = 2 micro_mg_sub_version = 0 micro_mg_do_cldice = T micro_mg_do_cldliq = T micro_mg_num_steps = 1 microp_uniform = F micro_mg_dcs = 5.500000000000000E-004 micro_mg_berg_eff_factor = 1.00000000000000 micro_mg_precip_frac_method = in_cloud micro_do_sb_physics = F micro_mg_adjust_cpt = F micro_mg_nccons = F micro_mg_nicons = F micro_mg_ncnst = 100000000.000000 micro_mg_ninst = 100000.000000000 cld_sediment_readnl: cldsed_ice_stokes_fac = 1.797693134862316E+308 RRTMG radiation scheme parameters: Frequency (timesteps) of Shortwave Radiation calc: 2 Frequency (timesteps) of Longwave Radiation calc: 2 SW/LW calc done every timestep for first N steps. N= 0 Use average zenith angle: F Output spectrally resolved fluxes: F rad_cnst_readnl: Radiation constituent lists: list_init1: namelist input for climate list rad namelist spec: A:Q:H2O rad namelist spec: N:O2:O2 rad namelist spec: N:CO2:CO2 rad namelist spec: N:ozone:O3 rad namelist spec: N:N2O:N2O rad namelist spec: N:CH4:CH4 rad namelist spec: N:CFC11:CFC11 rad namelist spec: N:CFC12:CFC12 gas list for climate calculations A:H2O has constituents name:Q N:O3 has pbuf name:ozone N:O2 has pbuf name:O2 N:CO2 has pbuf name:CO2 N:N2O has pbuf name:N2O N:CH4 has pbuf name:CH4 N:CFC11 has pbuf name:CFC11 N:CFC12 has pbuf name:CFC12 bulk aerosol list for climate calculations modal aerosol list for climate calculations Mode Definitions Initialize PIO subsystem: iotype = 6 solar_data_readnl: solar_const (W/m2) = -9999.00000000000 solar_data_readnl: solar_irrad_data_file = /cluster/shared/noresm/inputdata/atm/cam/solar/SolarForcingCMIP6_18491230-22991 231_c171031.nc solar_data_readnl: solar_parms_data_file = NONE solar_data_readnl: solar_euv_data_file = NONE solar_data_readnl: solar_wind_data_file = NONE solar_data_readnl: solar_data_type = SERIAL solar_data_readnl: solar_data_ymd = -99999999 solar_data_readnl: solar_data_tod = 0 Adding SLF_isotherms (jks) = T check_energy options: print_energy_errors = F Rayleigh friction not enabled. Reading aerosol tables from : /cluster/shared/noresm/inputdata/noresm-only/atm/ cam/camoslo/AeroTab_8jun17/ Reading ocean tracers from : /cluster/shared/noresm/inputdata/noresm-only/atm/c am/camoslo/Lana_ocean_1849_2006.nc DMS emission source is : ocean_flux Ocean POM emission source is : odowd Read in dyn_fv_inparm namelist from: atm_in FV dycore configuration: Lagrangian time splits (fv_nsplit) = 0 Tracer time splits (fv_nslptrac) = 0 Vertical re-mapping time splits (fv_nspltvrm) = 2 Scheme in E-W direction (fv_iord) = 4 Scheme in N-S direction (fv_jord) = 4 Scheme for vertical mapping (fv_kord) = 4 Conservative dynamics (fv_conserve) = F Filtering c-grid winds (fv_filcw) = 0 FFT filter (fv_fft_flt) = 1 Divergence/velocity damping (fv_div24del2flag) = 4 Coef for 2nd order velocity damping (fv_del2coef) = 300000.000000000 High-order top = F Geometry & pressure corr. for AM (fv_am_geom_crrct) = T Angular momentum (AM) correction (fv_am_correction) = T Apply AM fixer (fv_am_fixer) = T Level by level AM fixer (fv_am_fix_lbl) = T Enable AM diagnostics (fv_am_diag) = T spmd_readnl: Read in spmd_fv_inparm namelist from: atm_in FV grid decomposition: npr_y = 43 npr_z = 25 nprxy_x = 25 nprxy_y = 43 npes = 1075 npes_yz= 1075 npes_xy = 1075 Decomposing tracers into 1 groups using multi-2d decomposition methodology non-transpose geopk communication method = F Z-parallel non-transpose geopk communication method = F modcomm transpose method = 0 modcomm geopk method = 0 modcomm gatscat method = 0 modc_sw_dynrun = 0 modc_hs_dynrun = T modc_send_dynrun = T modc_mxreq_dynrun = -1 modc_sw_cdcore = 0 modc_hs_cdcore = T modc_send_cdcore = T modc_mxreq_cdcore = -1 modc_sw_gather = 1 modc_hs_gather = T modc_send_gather = T modc_mxreq_gather = 64 modc_sw_scatter = 0 modc_hs_scatter = F modc_send_scatter = T modc_mxreq_scatter = -1 modc_sw_tracer = 0 modc_hs_tracer = T modc_send_tracer = T modc_mxreq_tracer = -1 modc_onetwo = 2 modc_tracers = 3 qneg_readnl : QNEG statistics will be collected and printed at the end of the run (GETFIL): attempting to find local file fv_0.9x1.25_nc3000_Nsw042_Nrs008_Co060_Fi001_ZR_sgh30_24km_GRNL_c170103.nc (GETFIL): using /cluster/shared/noresm/inputdata/atm/cam/topo/fv_0.9x1.25_nc3000_Nsw042_Nrs008_ Co060_Fi001_ZR_sgh30_24km_GRNL_c170103.nc hycoef_read: read hyai, hybi, hyam, hybm hycoef_read: read P0 value: 100000.000000000 HYCOEF: A and/or B vertical level coefficients at full levels are not the arithmetic mean of half-level values k,atest,eps= 4 1.916531355537847E-002 1.000000000000000E-005 HYCOEF: A and/or B vertical level coefficients at full levels are not the arithmetic mean of half-level values k,atest,eps= 5 4.030868310899256E-002 1.000000000000000E-005 Layer Locations (*1000) 1 2.2552 0.0000 2.2552 3.6435 0.0000 3.6435 2 5.0317 0.0000 5.0317 7.5948 0.0000 7.5948 3 10.1579 0.0000 10.1579 14.3566 0.0000 14.3566 4 18.5553 0.0000 18.5553 24.6122 0.0000 24.6122 5 29.7347 0.0000 29.7347 35.9233 0.0000 35.9233 6 39.2730 0.0000 39.2730 43.1938 0.0000 43.1938 7 47.1145 0.0000 47.1145 51.6775 0.0000 51.6775 8 56.2405 0.0000 56.2405 61.5205 0.0000 61.5205 9 66.8005 0.0000 66.8005 73.7510 0.0000 73.7510 10 80.7014 0.0000 80.7014 87.8212 0.0000 87.8212 11 94.9410 0.0000 94.9410 103.3171 0.0000 103.3171 12 111.6932 0.0000 111.6932 121.5472 0.0000 121.5472 13 131.4013 0.0000 131.4013 142.9940 0.0000 142.9940 14 154.5868 0.0000 154.5868 168.2251 0.0000 168.2251 15 181.8634 0.0000 181.8634 178.2307 19.6774 197.9081 16 174.5980 39.3548 213.9528 170.3243 62.5043 232.8286 17 166.0507 85.6538 251.7044 161.0229 112.8879 273.9108 18 155.9952 140.1221 296.1172 150.0803 172.1616 322.2419 19 144.1654 204.2012 348.3666 137.2069 241.8940 379.1009 20 130.2483 279.5869 409.8352 122.0619 323.9306 445.9926 21 113.8756 368.2744 482.1499 104.2447 420.4425 524.6872 22 94.6139 472.6106 567.2244 84.9792 524.7995 609.7787 23 75.3445 576.9885 652.3330 66.5017 624.8877 691.3894 24 57.6589 672.7870 730.4459 50.1968 713.2077 763.4045 25 42.7346 753.6284 796.3631 37.1887 783.6697 820.8584 26 31.6427 813.7110 845.3537 28.4319 831.1028 859.5348 27 25.2212 848.4946 873.7159 22.2090 864.8113 887.0202 28 19.1967 881.1279 900.3246 16.4074 896.2372 912.6445 29 13.6180 911.3464 924.9645 11.0746 925.1238 936.1984 30 8.5311 938.9012 947.4323 6.2550 951.2305 957.4855 31 3.9788 963.5598 967.5386 1.9894 974.3360 976.3254 32 0.0000 985.1122 985.1122 0.0000 992.5561 992.5561 33 0.0000 1000.0000 1000.0000 reference pressures (Pa) 1 225.5240 364.3466 277.6452 2 503.1692 759.4820 512.6256 3 1015.7947 1435.6632 839.7370 4 1855.5317 2461.2220 1117.9359 5 2973.4676 3592.3250 953.8326 6 3927.3001 4319.3750 784.1498 7 4711.4499 5167.7499 912.6000 8 5624.0499 6152.0498 1055.9998 9 6680.0497 7375.0958 1390.0921 10 8070.1418 8782.1230 1423.9624 11 9494.1042 10331.7127 1675.2169 12 11169.3211 12154.7241 1970.8060 13 13140.1271 14299.4039 2318.5536 14 15458.6807 16822.5080 2727.6546 15 18186.3353 19790.8087 3208.9468 16 21395.2821 23282.8619 3775.1596 17 25170.4417 27391.0817 4441.2799 18 29611.7216 32224.1902 5224.9372 19 34836.6588 37910.0904 6146.8631 20 40983.5219 44599.2574 7231.4709 21 48214.9929 52468.7175 8507.4492 22 56722.4421 60977.8695 8510.8548 23 65233.2969 69138.9430 7811.2923 24 73044.5892 76340.4481 6591.7179 25 79636.3071 82085.8369 4899.0596 26 84535.3667 85953.4767 2836.2200 27 87371.5866 88702.0249 2660.8765 28 90032.4631 91264.4547 2463.9831 29 92496.4462 93619.8398 2246.7872 30 94743.2335 95748.5480 2010.6290 31 96753.8625 97632.5407 1757.3566 32 98511.2190 99255.6095 1488.7810 33 100000.0000 MOD_COMM - modcam_npryz = 43 25 25 43 MOD_COMM - modcam_tagoffset = 1075 MOD_COMM - modcam_method modcam_geopk modcam_gatscat modcam_maxirr = 0 0 0 3 Using local dynamic storage for mod_comm window Mod_comm - ghostrat = 2.50000000000000 Mod_comm - geopkrat = 12.0000000000000 (MOD_COMM) - mod_comm not being used for dynamcis-physics transposes Mod_comm - tracmax dpvarmax totvar tracbmax = 1 0 1 1 Mod_comm - r4 windows disabled Mod_comm t1_win window size = 114048 Mod_comm r8_win window size = 165888 Mod_comm r4_win window size = 1 Mod_comm i4_win window size = 1 nlat_p( 0 ) = 4 nlat_p( 1 ) = 4 nlat_p( 2 ) = 4 nlat_p( 3 ) = 4 nlat_p( 4 ) = 4 nlat_p( 5 ) = 4 nlat_p( 6 ) = 4 nlat_p( 7 ) = 4 nlat_p( 8 ) = 4 nlat_p( 9 ) = 4 nlat_p( 10 ) = 4 nlat_p( 11 ) = 4 nlat_p( 12 ) = 5 nlat_p( 13 ) = 5 nlat_p( 14 ) = 5 nlat_p( 15 ) = 5 nlat_p( 16 ) = 5 nlat_p( 17 ) = 5 nlat_p( 18 ) = 5 nlat_p( 19 ) = 5 nlat_p( 20 ) = 5 nlat_p( 21 ) = 5 nlat_p( 22 ) = 5 nlat_p( 23 ) = 5 nlat_p( 24 ) = 5 nlat_p( 25 ) = 5 nlat_p( 26 ) = 5 nlat_p( 27 ) = 5 nlat_p( 28 ) = 5 nlat_p( 29 ) = 5 nlat_p( 30 ) = 5 nlat_p( 31 ) = 5 nlat_p( 32 ) = 4 nlat_p( 33 ) = 4 nlat_p( 34 ) = 4 nlat_p( 35 ) = 4 nlat_p( 36 ) = 4 nlat_p( 37 ) = 4 nlat_p( 38 ) = 4 nlat_p( 39 ) = 4 nlat_p( 40 ) = 4 nlat_p( 41 ) = 4 nlat_p( 42 ) = 4 Grid: fv_centers, ID = 101, lat coord = lat, lon coord = lon, unstruct = F, block_ind = F, zonal_grid = F Attribute: gw, long name = 'latitude weights' dimname = lat Grid: fv_u_stagger, ID = 102, lat coord = slat, lon coord = lon, unstruct = F, block_ind = F, zonal_grid = F Attribute: w_stag, long name = 'staggered latitude weights' dimname = slat Grid: fv_v_stagger, ID = 103, lat coord = lat, lon coord = slon, unstruct = F, block_ind = F, zonal_grid = F Grid: fv_centers_zonal, ID = 104, lat coord = lat, lon coord = zlon, unstruct = F, block_ind = F, zonal_grid = T Attribute: gw, long name = 'latitude weights' dimname = lat Grid: physgrid, ID = 100, lat coord = lat, lon coord = lon, unstruct = F, block_ind = T, zonal_grid = F Attribute: gw, long name = 'latitude weights' dimname = lat Advected constituent list: 1 Q Specific humidity wet 2 CLDLIQ Grid box averaged cloud liquid amount wet 3 CLDICE Grid box averaged cloud ice amount wet 4 NUMLIQ Grid box averaged cloud liquid number wet 5 NUMICE Grid box averaged cloud ice number wet 6 RAINQM Grid box averaged rain amount wet 7 SNOWQM Grid box averaged snow amount wet 8 NUMRAI Grid box averaged rain number wet 9 NUMSNO Grid box averaged snow number wet 10 SO2 SO2 dry 11 H2SO4 H2SO4 dry 12 DMS DMS dry 13 H2O2 H2O2 dry 14 SO4_NA SO4_NA dry 15 SO4_A1 SO4_A1 dry 16 SO4_A2 SO4_A2 dry 17 SO4_AC SO4_AC dry 18 SO4_PR SO4_PR dry 19 BC_N BC_N dry 20 BC_AX BC_AX dry 21 BC_NI BC_NI dry 22 BC_A BC_A dry 23 BC_AI BC_AI dry 24 BC_AC BC_AC dry 25 OM_NI OM_NI dry 26 OM_AI OM_AI dry 27 OM_AC OM_AC dry 28 DST_A2 DST_A2 dry 29 DST_A3 DST_A3 dry 30 SS_A1 SS_A1 dry 31 SS_A2 SS_A2 dry 32 SS_A3 SS_A3 dry 33 SOA_NA SOA_NA dry 34 SOA_A1 SOA_A1 dry 35 SOA_LV SOA_LV dry 36 SOA_SV SOA_SV dry 37 monoterp monoterp dry 38 isoprene isoprene dry 39 CO2_OCN CO2_OCN dry 40 CO2_FFF CO2_FFF dry 41 CO2_LND CO2_LND dry 42 CO2 CO2 dry flbc_inti: wrk_date,wrk_sec,wrk_time = 12500101 1800 455885.020833333 flbc_inti: Species with specified lower boundary values CO2 CH4 N2O CFC11eq CF2CL2 flbc_inti: diagnostics lower bndy timing specs type = SERIAL fixed date = 0 fixed time = 0 there are 5 species with specified lower bndy values (GETFIL): attempting to find local file LBC_1750-2015_CMIP6_GlobAnnAvg_c180926.nc (GETFIL): using /cluster/shared/noresm/inputdata/atm/waccm/lb/LBC_1750-2015_CMIP6_GlobAnnAvg_c1 80926.nc flbc_inti: time out of bounds for dataset = /cluster/shared/noresm/inputdata/atm/waccm/lb/LBC_1750-2015_CMIP6_GlobAnnAvg_c1 80926.nc ERROR: Unknown error submitted to shr_abort_abort.